| Round | Overall | Player |
|---|---|---|
| 1 | 11th |
SP
Johan Santana
|
| 2 | 14th |
OF
Adam Dunn
|
| 3 | 35th |
3B
Hank Blalock
|
| 4 | 38th |
2B
Rickie Weeks
|
| 5 | 59th |
SS
Jimmy Rollins
|
| 6 | 62nd |
SP
Randy Johnson
|
| 7 | 83rd |
OF
Jim Edmonds
|
| 8 | 86th |
1B
Prince Fielder
|
| 9 | 107th |
OF
Jonny Gomes
|
| 10 | 110th |
SP
Livan Hernandez
|
| 11 | 131st |
1B
Justin Morneau
|
| 12 | 134th |
SP
Scott Kazmir
|
| 13 | 155th | OF Josh Willingham |
| 14 | 158th |
OF
Austin Kearns
|
| 15 | 179th |
SP
Brad Penny
|
| 16 | 182nd |
RP
Chris Ray
|
| 17 | 203rd |
3B
Edwin Encarnacion
|
| 18 | 206th |
SP
Ervin Santana
|
| 19 | 227th |
SP
Jeff Suppan
|
| 20 | 230th |
OF
Rocco Baldelli
|
| 21 | 251st |
RP
Mike Gonzalez
|
| 22 | 254th |
RP
Chris Reitsma
|
| 23 | 275th |
OF
Milton Bradley
|
| 24 | 278th |
2B
Luis A. Gonzalez
|
| 25 | 299th | SP Jason Vargas |
| 26 | 302nd |
C
Danny Ardoin
|
| 27 | 323rd |
OF
Nick Markakis
|
| 28 | 326th |
SP
Dave Bush
|
| 29 | 347th |
SS
David Eckstein
|