| Round | Overall | Player |
|---|---|---|
| 1 | 12th |
3B
David Wright
|
| 2 | 13th |
OF
Bobby Abreu
|
| 3 | 36th |
SP
Chris Carpenter
|
| 4 | 37th |
RP
Mariano Rivera
|
| 5 | 60th |
SP
Rich Harden
|
| 6 | 61st |
1B
Jason Giambi
|
| 7 | 84th |
OF
Jeff Francoeur
|
| 8 | 85th |
OF
Brian S. Giles
|
| 9 | 108th |
SP
A.J. Burnett
|
| 10 | 109th |
SS
Rafael Furcal
|
| 11 | 132nd | OF Jeremy Hermida |
| 12 | 133rd |
2B
Robinson Cano
|
| 13 | 156th |
SP
Jake Westbrook
|
| 14 | 157th |
RP
Jose Valverde
|
| 15 | 180th |
1B
Dan Johnson
|
| 16 | 181st |
SP
Tom Glavine
|
| 17 | 204th |
3B
Ryan Zimmerman
|
| 18 | 205th |
SP
Aaron Harang
|
| 19 | 228th |
SP
Jarrod Washburn
|
| 20 | 229th |
OF
Garret Anderson
|
| 21 | 252nd |
SP
Gustavo Chacin
|
| 22 | 253rd |
SS
J.J. Hardy
|
| 23 | 276th |
2B
Jose Castillo
|
| 24 | 277th |
OF
Jose Cruz Jr
|
| 25 | 300th |
C
Jason Kendall
|
| 26 | 301st |
SP
David Wells
|
| 27 | 324th |
1B
Shea Hillenbrand
|
| 28 | 325th |
SP
Brandon Backe
|
| 29 | 348th |
SP
Ted Lilly
|