| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Ken Griffey Jr Cin |
| 2 | 15th | SS Derek Jeter NYA |
| 3 | 34th | 2B Jose Vidro Mon |
| 4 | 39th | RP Robb Nen SF |
| 5 | 58th | 1B Pat Burrell Phi |
| 6 | 63rd | SP Al Leiter NYN |
| 7 | 82nd | 3B Eric Chavez Oak |
| 8 | 87th | OF Carl Everett Bos |
| 9 | 106th | RP Troy Percival Ana |
| 10 | 111th | C Charles Johnson Fla |
| 11 | 130th | SP Kris Benson Pit |
| 12 | 135th | SS Omar Vizquel Cle |
| 13 | 154th | OF Jose Cruz Jr Tor |
| 14 | 159th | OF Carlos Lee ChA |
| 15 | 178th | SP Jose Lima Hou |
| 16 | 183rd | OF Terrence Long Oak |
| 17 | 202nd | 3B Matt Williams Ari |
| 18 | 207th | SP Matt Clement Fla |
| 19 | 226th | 2B Pokey Reese Cin |
| 20 | 231st | 1B Fred McGriff TB |
| 21 | 250th | SP Kirk Rueter SF |
| 22 | 255th | C Eddie Taubensee Cle |
| 23 | 274th | SP John Halama Sea |
| 24 | 279th | OF Ray Lankford StL |
| 25 | 298th | SP Todd Ritchie Pit |
| 26 | 303rd | OF Paul O'Neill NYA |
| 27 | 322nd | OF Doug Glanville Phi |
| 28 | 327th | SS Alex Gonzalez Tor |
| 29 | 346th | 1B Mo Vaughn Ana |