| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 3B Troy Glaus Ana |
| 2 | 17th | 1B Mark McGwire StL |
| 3 | 32nd | OF Juan Gonzalez Cle |
| 4 | 41st | OF Brian S. Giles Pit |
| 5 | 56th | SP Darryl Kile StL |
| 6 | 65th | SS Rafael Furcal Atl |
| 7 | 80th | RP Derek Lowe Bos |
| 8 | 89th | SP Roger Clemens NYA |
| 9 | 104th | C Todd Hundley ChN |
| 10 | 113th | SP Javier Vazquez Mon |
| 11 | 128th | SP Kevin Appier NYN |
| 12 | 137th | 2B Todd Walker Col |
| 13 | 152nd | OF Russ Branyan Cle |
| 14 | 161st | RP Bob Wickman Cle |
| 15 | 176th | DH Andres Galarraga Tex |
| 16 | 185th | 1B Tony Clark Det |
| 17 | 200th | SP Glendon Rusch NYN |
| 18 | 209th | OF Jeffrey Hammonds Mil |
| 19 | 224th | 2B Randy Velarde Tex |
| 20 | 233rd | 1B Derrek Lee Fla |
| 21 | 248th | C Javy Lopez Atl |
| 22 | 257th | SS Jimmy Rollins Phi |
| 23 | 272nd | SP Adam Eaton SD |
| 24 | 281st | OF Terrence Long Oak |
| 25 | 296th | SP Mike Sirotka Tor |
| 26 | 305th | 3B Craig Paquette StL |
| 27 | 320th | RP Mike Williams Pit |
| 28 | 329th | SP Todd Ritchie Pit |
| 29 | 344th | OF Ron Gant Col |