| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Barry Bonds SF |
| 3 | 25th | SP Mike Mussina NYA |
| 4 | 48th | SP Bartolo Colon Cle |
| 5 | 49th | OF Larry Walker Col |
| 6 | 72nd | SP Kris Benson Pit |
| 7 | 73rd | SP Kevin Millwood Atl |
| 8 | 96th | RP Jason Isringhausen Oak |
| 9 | 97th | 1B Paul Konerko ChA |
| 10 | 120th | OF Ben Grieve TB |
| 11 | 121st | SP Kerry Wood ChN |
| 12 | 144th | 3B Joe Randa KC |
| 13 | 145th | SP Jon Lieber ChN |
| 14 | 168th | OF Lance Berkman Hou |
| 15 | 169th | 2B Chuck Knoblauch NYA |
| 16 | 192nd | 2B Jose Ortiz Oak |
| 17 | 193rd | SP Mark Mulder Oak |
| 18 | 216th | C Ben Molina Ana |
| 19 | 217th | 3B Matt Williams Ari |
| 20 | 240th | 1B Kevin Young Pit |
| 21 | 241st | SP Chuck Smith Fla |
| 22 | 264th | SS Ricky Gutierrez ChN |
| 23 | 265th | SP Jim Parque ChA |
| 24 | 288th | SP Ismael Valdez Ana |
| 25 | 289th | OF Dmitri Young Cin |
| 26 | 312th | 1B Chris Richard Bal |
| 27 | 313th | SP Paul Wilson TB |
| 28 | 336th | C Jason LaRue Cin |
| 29 | 337th | SP John Halama Sea |