| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Ivan Rodriguez Tex |
| 2 | 23rd | 1B Frank Thomas ChA |
| 3 | 26th | OF Andruw Jones Atl |
| 4 | 47th | RP Billy Koch Tor |
| 5 | 50th | OF Magglio Ordonez ChA |
| 6 | 71st | SP Andy Pettitte NYA |
| 7 | 74th | 3B Tony Batista Tor |
| 8 | 95th | RP John Rocker Atl |
| 9 | 98th | RP Matt Mantei Ari |
| 10 | 119th | DH Edgar Martinez Sea |
| 11 | 122nd | SP Ryan Dempster Fla |
| 12 | 143rd | SP Kenny Rogers Tex |
| 13 | 146th | SP Woody Williams SD |
| 14 | 167th | OF Steve Finley Ari |
| 15 | 170th | RP John Smoltz Atl |
| 16 | 191st | SP Jamie Moyer Sea |
| 17 | 194th | 2B Quilvio Veras Atl |
| 18 | 215th | OF Carlos Beltran KC |
| 19 | 218th | SP Brian Moehler Det |
| 20 | 239th | SS Alex Gonzalez Tor |
| 21 | 242nd | 1B Fred McGriff TB |
| 22 | 263rd | SS Damian Jackson SD |
| 23 | 266th | SP Osvaldo Fernandez Cin |
| 24 | 287th | 2B Mark Grudzielanek LA |
| 25 | 290th | SP Britt Reames Mon |
| 26 | 311th | 3B Corey Koskie Min |
| 27 | 314th | C Bobby Estalella SF |
| 28 | 335th | OF Trot Nixon Bos |
| 29 | 338th | RP Jose Mesa Phi |