| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Ken Griffey Jr Cin |
| 2 | 13th | OF Vladimir Guerrero Mon |
| 3 | 36th | SP Al Leiter NYN |
| 4 | 37th | SS Miguel Tejada Oak |
| 5 | 60th | SP Livan Hernandez SF |
| 6 | 61st | OF Raul Mondesi Tor |
| 7 | 84th | 2B Craig Biggio Hou |
| 8 | 85th | 1B Richie Sexson Mil |
| 9 | 108th | SP Scott Elarton Hou |
| 10 | 109th | SP Brad Radke Min |
| 11 | 132nd | SP Brian Anderson Ari |
| 12 | 133rd | RP Tim Crabtree Tex |
| 13 | 156th | SP Dustin Hermanson StL |
| 14 | 157th | SP Cal Eldred ChA |
| 15 | 180th | SP Esteban Loaiza Tor |
| 16 | 181st | 3B Chris Truby Hou |
| 17 | 204th | SP Jeff Suppan KC |
| 18 | 205th | DH John Jaha Oak |
| 19 | 228th | OF Todd Hollandsworth Col |
| 20 | 229th | SP Jose Lima Hou |
| 21 | 252nd | 1B J.T. Snow SF |
| 22 | 253rd | SP Kirk Rueter SF |
| 23 | 276th | SP Albie Lopez TB |
| 24 | 277th | C Ramon Hernandez Oak |
| 25 | 300th | 3B Cal Ripken Bal |
| 26 | 301st | 1B Tino Martinez NYA |
| 27 | 324th | C Damian Miller Ari |
| 28 | 325th | 2B Luis Rivas Min |
| 29 | 348th | SS Orlando Cabrera Mon |