| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jeff Bagwell Hou |
| 2 | 16th | 1B Jason Giambi Oak |
| 3 | 33rd | 3B Jeff Cirillo Col |
| 4 | 40th | 3B Scott Rolen Phi |
| 5 | 57th | 2B Ray Durham ChA |
| 6 | 64th | SS Edgar Renteria StL |
| 7 | 81st | C Charles Johnson Fla |
| 8 | 88th | RP Keith Foulke ChA |
| 9 | 105th | RP Todd Jones Det |
| 10 | 112th | RP Danny Graves Cin |
| 11 | 129th | OF Luis Gonzalez Ari |
| 12 | 136th | SP Aaron Sele Sea |
| 13 | 153rd | OF Kenny Lofton Cle |
| 14 | 160th | SP Andy Ashby LA |
| 15 | 177th | SP Robert Person Phi |
| 16 | 184th | OF Rondell White ChN |
| 17 | 201st | C Einar Diaz Cle |
| 18 | 208th | OF Matt Lawton Ret |
| 19 | 225th | SS Cristian Guzman Min |
| 20 | 232nd | 2B Jose Offerman Bos |
| 21 | 249th | SP Brad Penny Fla |
| 22 | 256th | SP Chris Carpenter Tor |
| 23 | 273rd | SP Garrett Stephenson StL |
| 24 | 280th | OF Ray Lankford StL |
| 25 | 297th | SP Pat Hentgen Bal |
| 26 | 304th | SP Armando Reynoso Ari |
| 27 | 321st | SP Todd Stottlemyre Ari |
| 28 | 328th | 1B David Ortiz Min |
| 29 | 345th | 1B Brian Daubach Bos |