| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Vladimir Guerrero Mon |
| 2 | 17th | SP Greg Maddux Atl |
| 3 | 32nd | RP Trevor Hoffman SD |
| 4 | 41st | OF Andruw Jones Atl |
| 5 | 56th | 1B Sean Casey Cin |
| 6 | 65th | 3B Jeff Cirillo Col |
| 7 | 80th | RP Kazuhiro Sasaki Sea |
| 8 | 89th | 2B Craig Biggio Hou |
| 9 | 104th | SP Javier Vazquez Mon |
| 10 | 113th | RP Dave Veres StL |
| 11 | 128th | OF Ichiro Suzuki Sea |
| 12 | 137th | SS Tony Womack Ari |
| 13 | 152nd | OF Russ Branyan Cle |
| 14 | 161st | SP Eric Milton Min |
| 15 | 176th | C Mitch Meluskey Det |
| 16 | 185th | OF Mark Quinn KC |
| 17 | 200th | SP Brian Anderson Ari |
| 18 | 209th | SS Jimmy Rollins Phi |
| 19 | 224th | 3B Michael Barrett Mon |
| 20 | 233rd | SP Albie Lopez TB |
| 21 | 248th | 1B David Ortiz Min |
| 22 | 257th | 2B Carlos Febles KC |
| 23 | 272nd | SP Ismael Valdez Ana |
| 24 | 281st | 3B Chris Stynes Bos |
| 25 | 296th | C Sandy Alomar Jr. ChA |
| 26 | 305th | OF Ron Gant Col |
| 27 | 320th | SP Eric Gagne LA |
| 28 | 329th | 1B Rico Brogna Atl |
| 29 | 344th | SP Dave Mlicki Det |