| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Ivan Rodriguez Tex |
| 2 | 23rd | 1B Mark McGwire StL |
| 3 | 26th | RP Mariano Rivera NYA |
| 4 | 47th | 1B Mike Sweeney KC |
| 5 | 50th | RP Billy Koch Tor |
| 6 | 71st | 3B Fernando Tatis Mon |
| 7 | 74th | OF Jermaine Dye KC |
| 8 | 95th | SP Barry Zito Oak |
| 9 | 98th | OF J.D. Drew StL |
| 10 | 119th | 2B Jose Ortiz Oak |
| 11 | 122nd | SS Rafael Furcal Atl |
| 12 | 143rd | OF Bob Higginson Det |
| 13 | 146th | SP Aaron Sele Sea |
| 14 | 167th | SP Scott Elarton Hou |
| 15 | 170th | C Ben Petrick Col |
| 16 | 191st | SP Rick Ankiel StL |
| 17 | 194th | SS Julio Lugo Hou |
| 18 | 215th | SP Mark Mulder Oak |
| 19 | 218th | 3B Alfonso Soriano NYA |
| 20 | 239th | 1B Chris Richard Bal |
| 21 | 242nd | RP Tim Crabtree Tex |
| 22 | 263rd | SP Andy Benes StL |
| 23 | 266th | OF Roger Cedeno Det |
| 24 | 287th | SP Tony Armas Jr. Mon |
| 25 | 290th | SP Brad Penny Fla |
| 26 | 311th | SP Mike Sirotka Tor |
| 27 | 314th | OF Ruben Mateo Tex |
| 28 | 335th | SP Garrett Stephenson StL |
| 29 | 338th | 2B Adam Kennedy Ana |