| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Mike Piazza NYN |
| 2 | 21st | SS Nomar Garciaparra Bos |
| 3 | 28th | 2B Roberto Alomar NYN |
| 4 | 45th | OF Gary Sheffield LA |
| 5 | 52nd | SP David Wells ChA |
| 6 | 69th | OF Shawn Green LA |
| 7 | 76th | SP Orlando Hernandez NYA |
| 8 | 93rd | RP Billy Wagner Hou |
| 9 | 100th | RP Jeff Shaw LA |
| 10 | 117th | RP John Smoltz Atl |
| 11 | 124th | OF Kenny Lofton Cle |
| 12 | 141st | C Javy Lopez Atl |
| 13 | 148th | 3B Ken Caminiti Tex |
| 14 | 165th | SP Chuck Finley Cle |
| 15 | 172nd | 1B David Segui Bal |
| 16 | 189th | SP James Baldwin ChA |
| 17 | 196th | SP Denny Neagle Col |
| 18 | 213th | 3B Vinny Castilla Hou |
| 19 | 220th | SP Pat Hentgen Bal |
| 20 | 237th | 1B Tino Martinez NYA |
| 21 | 244th | SS Melvin Mora Bal |
| 22 | 261st | OF Dante Bichette Bos |
| 23 | 268th | SP Todd Stottlemyre Ari |
| 24 | 285th | OF Delino DeShields Bal |
| 25 | 292nd | 1B J.T. Snow SF |
| 26 | 309th | SP Hideo Nomo Bos |
| 27 | 316th | 2B Fernando Vina StL |
| 28 | 333rd | 2B Jerry Hairston Jr. Bal |
| 29 | 340th | OF Brady Anderson Bal |