| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Sammy Sosa ChN |
| 2 | 18th | 1B Jason Giambi Oak |
| 3 | 31st | 3B Scott Rolen Phi |
| 4 | 42nd | RP Anthony Alford Fla |
| 5 | 55th | SP Tom Glavine Atl |
| 6 | 66th | RP Jason Isringhausen Oak |
| 7 | 79th | OF Moises Alou Hou |
| 8 | 90th | SP Andy Pettitte NYA |
| 9 | 103rd | SP Mike Hampton Col |
| 10 | 114th | RP Roberto Hernandez KC |
| 11 | 127th | OF David Justice NYA |
| 12 | 138th | SP Rick Helling Tex |
| 13 | 151st | 2B Chuck Knoblauch NYA |
| 14 | 162nd | 1B Eric Karros LA |
| 15 | 175th | OF Jeffrey Hammonds Mil |
| 16 | 186th | C Bobby Estalella SF |
| 17 | 199th | SS Rich Aurilia SF |
| 18 | 210th | 3B Travis Fryman Cle |
| 19 | 223rd | OF Jose Valentin ChA |
| 20 | 234th | 2B Damion Easley Det |
| 21 | 247th | RP Jose Mesa Phi |
| 22 | 258th | SS Carlos Guillen Sea |
| 23 | 271st | SP Omar Daal Phi |
| 24 | 282nd | SP Jeff Suppan KC |
| 25 | 295th | C Damian Miller Ari |
| 26 | 306th | SP Christian Parker NYA |
| 27 | 319th | OF Trot Nixon Bos |
| 28 | 330th | 1B Doug Mientkiewicz Min |
| 29 | 343rd | SP Blake Stein KC |