| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Vladimir Guerrero Mon |
| 2 | 16th | 1B Jason Giambi Oak |
| 3 | 33rd | OF Johnny Damon Oak |
| 4 | 40th | SP Greg Maddux Atl |
| 5 | 57th | OF Bernie Williams NYA |
| 6 | 64th | 2B Jose Ortiz Oak |
| 7 | 81st | 3B Mike Lowell Fla |
| 8 | 88th | 1B Pat Burrell Phi |
| 9 | 105th | RP John Rocker Atl |
| 10 | 112th | C Ben Petrick Col |
| 11 | 129th | SS Rich Aurilia SF |
| 12 | 136th | RP Ugueth Urbina Mon |
| 13 | 153rd | SP Eric Milton Min |
| 14 | 160th | OF Josh Hamilton TB |
| 15 | 177th | OF Mark Quinn KC |
| 16 | 184th | OF Gabe Kapler Tex |
| 17 | 201st | RP Jose Jimenez Col |
| 18 | 208th | SP Bruce Chen Phi |
| 19 | 225th | SP Esteban Loaiza Tor |
| 20 | 232nd | OF Rondell White ChN |
| 21 | 249th | C Damian Miller Ari |
| 22 | 256th | RP Tom Gordon ChN |
| 23 | 273rd | SP Todd Ritchie Pit |
| 24 | 280th | 2B Jerry Hairston Jr. Bal |
| 25 | 297th | SS Royce Clayton ChA |
| 26 | 304th | SP Josh Beckett Fla |
| 27 | 321st | SP Brian Moehler Det |
| 28 | 328th | SP Tomo Ohka Bos |
| 29 | 345th | 3B Scott Brosius NYA |