| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Pedro Martinez Bos |
| 2 | 23rd | 2B Edgardo Alfonzo NYN |
| 3 | 26th | OF Bobby Abreu Phi |
| 4 | 47th | 3B Jeff Cirillo Col |
| 5 | 50th | 1B Mike Sweeney KC |
| 6 | 71st | OF Preston Wilson Fla |
| 7 | 74th | RP Kazuhiro Sasaki Sea |
| 8 | 95th | SP Roger Clemens NYA |
| 9 | 98th | SS Jimmy Rollins Phi |
| 10 | 119th | C Darrin Fletcher Tor |
| 11 | 122nd | SP Jeff Weaver Det |
| 12 | 143rd | OF Carlos Lee ChA |
| 13 | 146th | RP Troy Percival Ana |
| 14 | 167th | SP Dave Burba Cle |
| 15 | 170th | DH Brad Fullmer Tor |
| 16 | 191st | RP Bob Wickman Cle |
| 17 | 194th | SP Matt Clement Fla |
| 18 | 215th | OF Dante Bichette Bos |
| 19 | 218th | 1B Fred McGriff TB |
| 20 | 239th | 3B Aramis Ramirez Pit |
| 21 | 242nd | SP Rob Bell Cin |
| 22 | 263rd | OF Paul O'Neill NYA |
| 23 | 266th | SP Pedro Astacio Col |
| 24 | 287th | SS Mike Bordick Bal |
| 25 | 290th | SP Octavio Dotel Hou |
| 26 | 311th | C Jason LaRue Cin |
| 27 | 314th | RP Odalis Perez Atl |
| 28 | 335th | RP Jose Mesa Phi |
| 29 | 338th | 2B Marlon Anderson Phi |