| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 3B Chipper Jones Atl |
| 2 | 15th | OF Ken Griffey Jr Cin |
| 3 | 34th | SP Tim Hudson Oak |
| 4 | 39th | SP Kevin Brown LA |
| 5 | 58th | OF Gary Sheffield LA |
| 6 | 63rd | 1B Jim Thome Cle |
| 7 | 82nd | 2B Craig Biggio Hou |
| 8 | 87th | SP Ryan Dempster Fla |
| 9 | 106th | OF Shannon Stewart Tor |
| 10 | 111th | RP Jason Isringhausen Oak |
| 11 | 130th | SP Javier Vazquez Mon |
| 12 | 135th | SS Tony Womack Ari |
| 13 | 154th | SP Scott Elarton Hou |
| 14 | 159th | C Todd Hundley ChN |
| 15 | 178th | 1B Eric Karros LA |
| 16 | 183rd | OF Kenny Lofton Cle |
| 17 | 202nd | 1B John Olerud Sea |
| 18 | 207th | SP Scott Williamson Cin |
| 19 | 226th | OF Jeffrey Hammonds Mil |
| 20 | 231st | 2B Chuck Knoblauch NYA |
| 21 | 250th | 3B Vinny Castilla Hou |
| 22 | 255th | SP Chris Carpenter Tor |
| 23 | 274th | SP Paul Wilson TB |
| 24 | 279th | SP Tony Armas Jr. Mon |
| 25 | 298th | C Sandy Alomar Jr. ChA |
| 26 | 303rd | SP Ryan Kohlmeier Bal |
| 27 | 322nd | SP Jeff Suppan KC |
| 28 | 327th | 3B Drew Henson NYA |
| 29 | 346th | SS Alex Gonzalez Fla |