| Round | Overall | Player |
|---|---|---|
| 1 | 5th | C Ivan Rodriguez Tex |
| 2 | 20th | OF Andruw Jones Atl |
| 3 | 29th | SP Bartolo Colon Cle |
| 4 | 44th | 3B Fernando Tatis Mon |
| 5 | 53rd | SS Edgar Renteria StL |
| 6 | 68th | OF Carl Everett Bos |
| 7 | 77th | OF Jermaine Dye KC |
| 8 | 92nd | SP Kerry Wood ChN |
| 9 | 101st | 2B Luis Castillo Fla |
| 10 | 116th | RP Danny Graves Cin |
| 11 | 125th | SP Kris Benson Pit |
| 12 | 140th | 2B Eric Young ChN |
| 13 | 149th | 1B Ryan Klesko SD |
| 14 | 164th | RP Curt Leskanic Mil |
| 15 | 173rd | OF Carlos Beltran KC |
| 16 | 188th | SP Robert Person Phi |
| 17 | 197th | 1B Derrek Lee Fla |
| 18 | 212th | OF Terrence Long Oak |
| 19 | 221st | OF Jose Cruz Jr Tor |
| 20 | 236th | 2B Pokey Reese Cin |
| 21 | 245th | SP LaTroy Hawkins Min |
| 22 | 260th | 3B Michael Barrett Mon |
| 23 | 269th | SS Alex Gonzalez Tor |
| 24 | 284th | SP Albie Lopez TB |
| 25 | 293rd | 1B Nick Johnson NYA |
| 26 | 308th | C Tyler Houston Mil |
| 27 | 317th | OF Juan Pierre Col |
| 28 | 332nd | 3B Russ Davis SF |
| 29 | 341st | 1B Robert Fick Det |