| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Magglio Ordonez ChA |
| 3 | 25th | OF Richard Hidalgo Hou |
| 4 | 48th | 1B Sean Casey Cin |
| 5 | 49th | 3B Eric Chavez Oak |
| 6 | 72nd | RP Robb Nen SF |
| 7 | 73rd | SP Barry Zito Oak |
| 8 | 96th | SP Freddy Garcia Sea |
| 9 | 97th | 3B Adrian Beltre LA |
| 10 | 120th | SP Matt Morris StL |
| 11 | 121st | 1B Paul Konerko ChA |
| 12 | 144th | C Mitch Meluskey Det |
| 13 | 145th | RP Dave Veres StL |
| 14 | 168th | SP Rick Ankiel StL |
| 15 | 169th | SP Ben Sheets Mil |
| 16 | 192nd | OF Mike Cameron Sea |
| 17 | 193rd | C Brad Ausmus Hou |
| 18 | 216th | 2B Damion Easley Det |
| 19 | 217th | 3B Corey Koskie Min |
| 20 | 240th | SP Jim Parque ChA |
| 21 | 241st | 2B Ron Belliard Mil |
| 22 | 264th | SP Jamie Moyer Sea |
| 23 | 265th | OF Corey Patterson ChN |
| 24 | 288th | OF Mark Kotsay SD |
| 25 | 289th | 1B J.T. Snow SF |
| 26 | 312th | OF Alex Ochoa Cin |
| 27 | 313th | RP Felix Rodriguez SF |
| 28 | 336th | SS Damian Jackson SD |
| 29 | 337th | 3B Sean Burroughs SD |