| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SP Randy Johnson Ari |
| 2 | 14th | OF Sammy Sosa ChN |
| 3 | 35th | 1B Frank Thomas ChA |
| 4 | 38th | 2B Ray Durham ChA |
| 5 | 59th | 3B Phil Nevin SD |
| 6 | 62nd | SP Tom Glavine Atl |
| 7 | 83rd | C Charles Johnson Fla |
| 8 | 86th | DH Edgar Martinez Sea |
| 9 | 107th | SS Neifi Perez Col |
| 10 | 110th | OF Bob Higginson Det |
| 11 | 131st | OF Cliff Floyd Fla |
| 12 | 134th | SP Darren Dreifort LA |
| 13 | 155th | RP Roberto Hernandez KC |
| 14 | 158th | OF Garret Anderson Ana |
| 15 | 179th | SP Kevin Appier NYN |
| 16 | 182nd | DH Andres Galarraga Tex |
| 17 | 203rd | 3B Joe Randa KC |
| 18 | 206th | 1B David Segui Bal |
| 19 | 227th | 2B Fernando Vina StL |
| 20 | 230th | SP Mark Mulder Oak |
| 21 | 251st | SP Garrett Stephenson StL |
| 22 | 254th | SP Britt Reames Mon |
| 23 | 275th | SS Carlos Guillen Sea |
| 24 | 278th | OF Tom Goodwin LA |
| 25 | 299th | SP Jamey Wright Mil |
| 26 | 302nd | RP Scott Strickland Mon |
| 27 | 323rd | OF Delino DeShields Bal |
| 28 | 326th | C Eddie Taubensee Cle |
| 29 | 347th | RP Scott Schoeneweis Ana |