| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Manny Ramirez Bos |
| 2 | 13th | SP Mike Mussina NYA |
| 3 | 36th | 1B Rafael Palmeiro Tex |
| 4 | 37th | C Javy Lopez Atl |
| 5 | 60th | 3B Travis Fryman Cle |
| 6 | 61st | RP Billy Wagner Hou |
| 7 | 84th | SP Curt Schilling Ari |
| 8 | 85th | 2B Adam Kennedy Ana |
| 9 | 108th | SS Omar Vizquel Cle |
| 10 | 109th | OF Luis Gonzalez Ari |
| 11 | 132nd | OF Jeromy Burnitz Mil |
| 12 | 133rd | SP Mike Hampton Col |
| 13 | 156th | SP Andy Ashby LA |
| 14 | 157th | RP Jeff Shaw LA |
| 15 | 180th | SP Woody Williams SD |
| 16 | 181st | RP John Wetteland Tex |
| 17 | 204th | C Ben Molina Ana |
| 18 | 205th | 1B Tino Martinez NYA |
| 19 | 228th | 2B Mark Grudzielanek LA |
| 20 | 229th | SP James Baldwin ChA |
| 21 | 252nd | OF Todd Hollandsworth Col |
| 22 | 253rd | SP Carl Pavano Mon |
| 23 | 276th | OF Al Martin Sea |
| 24 | 277th | 3B Chris Truby Hou |
| 25 | 300th | RP Terry Adams LA |
| 26 | 301st | SS Alex Cora LA |
| 27 | 324th | C John Flaherty TB |
| 28 | 325th | SP Jose Lima Hou |
| 29 | 348th | OF Eric Owens Fla |