| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | OF Juan Gonzalez Cle |
| 3 | 27th | OF Darin Erstad Ana |
| 4 | 46th | OF Larry Walker Col |
| 5 | 51st | SP Al Leiter NYN |
| 6 | 70th | SS Rafael Furcal Atl |
| 7 | 75th | SP Darryl Kile StL |
| 8 | 94th | 2B Todd Walker Col |
| 9 | 99th | 3B Robin Ventura NYN |
| 10 | 118th | RP Matt Mantei Ari |
| 11 | 123rd | OF Brian Jordan Atl |
| 12 | 142nd | RP Todd Jones Det |
| 13 | 147th | C Ramon Hernandez Oak |
| 14 | 166th | SP Russ Ortiz SF |
| 15 | 171st | SP Rick Reed NYN |
| 16 | 190th | C Jason Varitek Bos |
| 17 | 195th | 3B Alfonso Soriano NYA |
| 18 | 214th | SP Mark Redman Min |
| 19 | 219th | OF Dmitri Young Cin |
| 20 | 238th | SS Orlando Cabrera Mon |
| 21 | 243rd | OF Juan Encarnacion Det |
| 22 | 262nd | SP Andy Benes StL |
| 23 | 267th | 3B Pedro Feliz SF |
| 24 | 286th | 1B David Ortiz Min |
| 25 | 291st | 3B Albert Pujols StL |
| 26 | 310th | OF Adam Piatt Oak |
| 27 | 315th | SP Esteban Yan TB |
| 28 | 334th | SP Chad Hutchinson StL |
| 29 | 339th | 1B Carlos Pena Tex |