| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 1B Jeff Bagwell Hou |
| 2 | 21st | SS Miguel Tejada Oak |
| 3 | 28th | 2B Jeff Kent SF |
| 4 | 45th | C Jorge Posada NYA |
| 5 | 52nd | RP Mariano Rivera NYA |
| 6 | 69th | RP Derek Lowe Bos |
| 7 | 76th | SP Livan Hernandez SF |
| 8 | 93rd | OF Geoff Jenkins Mil |
| 9 | 100th | OF Moises Alou Hou |
| 10 | 117th | OF Lance Berkman Hou |
| 11 | 124th | OF Ben Grieve TB |
| 12 | 141st | SP Jon Lieber ChN |
| 13 | 148th | RP John Smoltz Atl |
| 14 | 165th | SP Glendon Rusch NYN |
| 15 | 172nd | SP Brian Anderson Ari |
| 16 | 189th | SP Pete Harnisch Cin |
| 17 | 196th | 1B Tony Clark Det |
| 18 | 213th | SP Shane Reynolds Hou |
| 19 | 220th | OF Rusty Greer Tex |
| 20 | 237th | 3B Aaron Boone Cin |
| 21 | 244th | RP Mike Williams Pit |
| 22 | 261st | C Bobby Estalella SF |
| 23 | 268th | OF Jose Valentin ChA |
| 24 | 285th | 2B Jose Offerman Bos |
| 25 | 292nd | 1B Kevin Young Pit |
| 26 | 309th | SS Ricky Gutierrez ChN |
| 27 | 316th | 3B Bill Mueller ChN |
| 28 | 333rd | SP Chris Holt Det |
| 29 | 340th | SP Frank Castillo Bos |