| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Ivan Rodriguez Tex |
| 2 | 23rd | RP Trevor Hoffman SD |
| 3 | 26th | 1B Rafael Palmeiro Tex |
| 4 | 47th | OF Brian S. Giles Pit |
| 5 | 50th | 2B Jose Vidro Mon |
| 6 | 71st | OF Jim Edmonds StL |
| 7 | 74th | OF Moises Alou Hou |
| 8 | 95th | 3B Phil Nevin SD |
| 9 | 98th | OF Tim Salmon Ana |
| 10 | 119th | SP Andy Pettitte NYA |
| 11 | 122nd | RP Bob Wickman Cle |
| 12 | 143rd | SP Livan Hernandez SF |
| 13 | 146th | SP Javier Vazquez Mon |
| 14 | 167th | 3B Matt Williams Ari |
| 15 | 170th | SP Woody Williams SD |
| 16 | 191st | SS Mike Bordick Bal |
| 17 | 194th | SP Jeff Suppan KC |
| 18 | 215th | 2B Jose Offerman Bos |
| 19 | 218th | OF Brian Jordan Atl |
| 20 | 239th | 1B David Ortiz Min |
| 21 | 242nd | SP Adam Eaton SD |
| 22 | 263rd | OF Dmitri Young Cin |
| 23 | 266th | SP Chris Carpenter Tor |
| 24 | 287th | SP Tony Armas Jr. Mon |
| 25 | 290th | SP Joey Hamilton Tor |
| 26 | 311th | C Chad Kreuter LA |
| 27 | 314th | OF Jose Valentin ChA |
| 28 | 335th | OF Travis Lee Phi |
| 29 | 338th | SS Pat Meares Pit |