| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SP Greg Maddux Atl |
| 2 | 17th | 1B Mike Sweeney KC |
| 3 | 32nd | RP Robb Nen SF |
| 4 | 41st | 2B Luis Castillo Fla |
| 5 | 56th | SS Rafael Furcal Atl |
| 6 | 65th | SP Barry Zito Oak |
| 7 | 80th | C Ben Petrick Col |
| 8 | 89th | OF Geoff Jenkins Mil |
| 9 | 104th | 3B Dean Palmer Det |
| 10 | 113th | SP Rick Reed NYN |
| 11 | 128th | OF Preston Wilson Fla |
| 12 | 137th | OF Garret Anderson Ana |
| 13 | 152nd | SP Jarrod Washburn Ana |
| 14 | 161st | SP Rick Ankiel StL |
| 15 | 176th | SP Bruce Chen Phi |
| 16 | 185th | OF Matt Lawton Ret |
| 17 | 200th | OF Gabe Kapler Tex |
| 18 | 209th | SP Robert Person Phi |
| 19 | 224th | OF Carlos Beltran KC |
| 20 | 233rd | SP James Baldwin ChA |
| 21 | 248th | 3B Aaron Boone Cin |
| 22 | 257th | SS Alex Gonzalez Tor |
| 23 | 272nd | 1B J.T. Snow SF |
| 24 | 281st | 2B Fernando Vina StL |
| 25 | 296th | SP Rob Bell Cin |
| 26 | 305th | SP Esteban Loaiza Tor |
| 27 | 320th | C Tyler Houston Mil |
| 28 | 329th | SP Armando Reynoso Ari |
| 29 | 344th | SP Kent Bottenfield Hou |