| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 2B Jeff Kent SF |
| 2 | 16th | OF Sammy Sosa ChN |
| 3 | 33rd | SP Bartolo Colon Cle |
| 4 | 40th | RP Armando Benitez NYN |
| 5 | 57th | C Mike Lieberthal Phi |
| 6 | 64th | OF Bernie Williams NYA |
| 7 | 81st | 1B Richie Sexson Mil |
| 8 | 88th | SP Orlando Hernandez NYA |
| 9 | 105th | RP Jason Isringhausen Oak |
| 10 | 112th | 3B Robin Ventura NYN |
| 11 | 129th | SP Javier Vazquez Mon |
| 12 | 136th | OF J.D. Drew StL |
| 13 | 153rd | OF Carlos Lee ChA |
| 14 | 160th | 1B Tony Clark Det |
| 15 | 177th | SS Neifi Perez Col |
| 16 | 184th | 2B Jay Bell Ari |
| 17 | 201st | 3B Joe Randa KC |
| 18 | 208th | SP Gil Heredia Oak |
| 19 | 225th | 1B John Olerud Sea |
| 20 | 232nd | SP Osvaldo Fernandez Cin |
| 21 | 249th | SP Tony Armas Jr. Mon |
| 22 | 256th | SS Mike Bordick Bal |
| 23 | 273rd | OF Todd Hollandsworth Col |
| 24 | 280th | SP Pedro Astacio Col |
| 25 | 297th | SP Jamey Wright Mil |
| 26 | 304th | SP Britt Reames Mon |
| 27 | 321st | RP Steve Karsay Cle |
| 28 | 328th | C Dan Wilson Sea |
| 29 | 345th | OF Alex Ochoa Cin |