| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Jason Giambi Oak |
| 2 | 13th | 3B Troy Glaus Ana |
| 3 | 36th | SP Tim Hudson Oak |
| 4 | 37th | RP Trevor Hoffman SD |
| 5 | 60th | SP Darryl Kile StL |
| 6 | 61st | 3B Tony Batista Tor |
| 7 | 84th | OF Jim Edmonds StL |
| 8 | 85th | OF Jermaine Dye KC |
| 9 | 108th | OF Carl Everett Bos |
| 10 | 109th | SP Kerry Wood ChN |
| 11 | 132nd | 2B Todd Walker Col |
| 12 | 133rd | SP Jeff D'Amico Mil |
| 13 | 156th | SP Aaron Sele Sea |
| 14 | 157th | 2B Jose Ortiz Oak |
| 15 | 180th | C Brad Ausmus Hou |
| 16 | 181st | RP Tim Crabtree Tex |
| 17 | 204th | SS Julio Lugo Hou |
| 18 | 205th | OF Ellis Burks Cle |
| 19 | 228th | 1B Chris Richard Bal |
| 20 | 229th | SP Adam Eaton SD |
| 21 | 252nd | 3B Corey Koskie Min |
| 22 | 253rd | RP Jose Mesa Phi |
| 23 | 276th | SP Andy Benes StL |
| 24 | 277th | SP Kirk Rueter SF |
| 25 | 300th | C Mike Matheny StL |
| 26 | 301st | SP Mike Sirotka Tor |
| 27 | 324th | SS Rey Sanchez KC |
| 28 | 325th | SP Garrett Stephenson StL |
| 29 | 348th | RP Orber Moreno KC |