| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Todd Helton Col |
| 2 | 20th | OF Barry Bonds SF |
| 3 | 29th | SP Kevin Brown LA |
| 4 | 44th | 2B Ray Durham ChA |
| 5 | 53rd | RP Billy Koch Tor |
| 6 | 68th | OF Johnny Damon Oak |
| 7 | 77th | RP Danny Graves Cin |
| 8 | 92nd | 1B Pat Burrell Phi |
| 9 | 101st | RP Anthony Alford Fla |
| 10 | 116th | RP Troy Percival Ana |
| 11 | 125th | SP Scott Elarton Hou |
| 12 | 140th | 3B Ken Caminiti Tex |
| 13 | 149th | SP Shawn Estes SF |
| 14 | 164th | SS Tony Womack Ari |
| 15 | 173rd | 3B Travis Fryman Cle |
| 16 | 188th | SP Sidney Ponson Bal |
| 17 | 197th | 1B David Segui Bal |
| 18 | 212th | 2B Jose Offerman Bos |
| 19 | 221st | OF Jose Valentin ChA |
| 20 | 236th | C Brook Fordyce Bal |
| 21 | 245th | SP Brian Moehler Det |
| 22 | 260th | SS Royce Clayton ChA |
| 23 | 269th | OF Juan Encarnacion Det |
| 24 | 284th | 3B Michael Barrett Mon |
| 25 | 293rd | C Damian Miller Ari |
| 26 | 308th | SP Frank Castillo Bos |
| 27 | 317th | RP Shigetoshi Hasegawa Ana |
| 28 | 332nd | 1B Lee Stevens Mon |
| 29 | 341st | SP Blake Stein KC |