| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Pedro Martinez Bos |
| 2 | 23rd | 2B Roberto Alomar NYN |
| 3 | 26th | SS Nomar Garciaparra Bos |
| 4 | 47th | SP Tom Glavine Atl |
| 5 | 50th | SP Curt Schilling Ari |
| 6 | 71st | OF Larry Walker Col |
| 7 | 74th | 1B Jim Thome Cle |
| 8 | 95th | SP Ryan Dempster Fla |
| 9 | 98th | SS Edgar Renteria StL |
| 10 | 119th | C Todd Hundley ChN |
| 11 | 122nd | OF Tim Salmon Ana |
| 12 | 143rd | OF Luis Gonzalez Ari |
| 13 | 146th | SP Brad Radke Min |
| 14 | 167th | SP Kevin Appier NYN |
| 15 | 170th | 1B Ryan Klesko SD |
| 16 | 191st | 2B Chuck Knoblauch NYA |
| 17 | 194th | 3B Adrian Beltre LA |
| 18 | 215th | SP Carl Pavano Mon |
| 19 | 218th | SP Scott Williamson Cin |
| 20 | 239th | SP Pat Hentgen Bal |
| 21 | 242nd | 3B John Valentin Bos |
| 22 | 263rd | SP Jose Lima Hou |
| 23 | 266th | 1B Fred McGriff TB |
| 24 | 287th | SP Chuck Smith Fla |
| 25 | 290th | C Sandy Alomar Jr. ChA |
| 26 | 311th | SP Cal Eldred ChA |
| 27 | 314th | RP Kerry Ligtenberg Atl |
| 28 | 335th | 3B Tony Fernandez Mil |
| 29 | 338th | OF Ron Gant Col |