| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Carlos Delgado Tor |
| 2 | 18th | SP Randy Johnson Ari |
| 3 | 31st | OF Juan Gonzalez Cle |
| 4 | 42nd | OF Richard Hidalgo Hou |
| 5 | 55th | OF Bobby Abreu Phi |
| 6 | 66th | 3B Phil Nevin SD |
| 7 | 79th | SP Livan Hernandez SF |
| 8 | 90th | RP Keith Foulke ChA |
| 9 | 103rd | C Charles Johnson Fla |
| 10 | 114th | OF Shannon Stewart Tor |
| 11 | 127th | RP Curt Leskanic Mil |
| 12 | 138th | RP John Smoltz Atl |
| 13 | 151st | OF Bob Higginson Det |
| 14 | 162nd | SP Woody Williams SD |
| 15 | 175th | SP Pete Harnisch Cin |
| 16 | 186th | SP Brian Anderson Ari |
| 17 | 199th | SP Shane Reynolds Hou |
| 18 | 210th | RP Jose Jimenez Col |
| 19 | 223rd | 1B Kevin Young Pit |
| 20 | 234th | C Bobby Estalella SF |
| 21 | 247th | SS Ricky Gutierrez ChN |
| 22 | 258th | 2B Bret Boone Sea |
| 23 | 271st | 2B Mark Grudzielanek LA |
| 24 | 282nd | SP Paul Wilson TB |
| 25 | 295th | SP Octavio Dotel Hou |
| 26 | 306th | SS Mark Loretta Mil |
| 27 | 319th | SS Damian Jackson SD |
| 28 | 330th | 3B Herbert Perry ChA |
| 29 | 343rd | OF Glenallen Hill Ana |