| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Mike Piazza NYN |
| 2 | 21st | 2B Edgardo Alfonzo NYN |
| 3 | 28th | RP Mariano Rivera NYA |
| 4 | 45th | RP Kazuhiro Sasaki Sea |
| 5 | 52nd | 3B Eric Chavez Oak |
| 6 | 69th | C Javy Lopez Atl |
| 7 | 76th | OF Moises Alou Hou |
| 8 | 93rd | 1B Paul Konerko ChA |
| 9 | 100th | RP Todd Jones Det |
| 10 | 117th | OF Lance Berkman Hou |
| 11 | 124th | SS Rich Aurilia SF |
| 12 | 141st | OF David Justice NYA |
| 13 | 148th | SP Andy Ashby LA |
| 14 | 165th | 3B Matt Williams Ari |
| 15 | 172nd | SP Russ Ortiz SF |
| 16 | 189th | SP Jim Parque ChA |
| 17 | 196th | OF Brian Jordan Atl |
| 18 | 213th | SS Deivi Cruz Det |
| 19 | 220th | SP Hideo Nomo Bos |
| 20 | 237th | OF Jose Cruz Jr Tor |
| 21 | 244th | 2B Pokey Reese Cin |
| 22 | 261st | SP Brad Penny Fla |
| 23 | 268th | RP Scott Strickland Mon |
| 24 | 285th | 3B Todd Zeile NYN |
| 25 | 292nd | SP Denny Neagle Col |
| 26 | 309th | 2B Jerry Hairston Jr. Bal |
| 27 | 316th | RP Byung-Hyun Kim Ari |
| 28 | 333rd | SP Kevin Tapani ChN |
| 29 | 340th | OF Reggie Sanders Ari |