| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Chipper Jones Atl |
| 2 | 14th | SS Derek Jeter NYA |
| 3 | 35th | 1B Frank Thomas ChA |
| 4 | 38th | OF Andruw Jones Atl |
| 5 | 59th | OF Magglio Ordonez ChA |
| 6 | 62nd | OF Gary Sheffield LA |
| 7 | 83rd | OF Darin Erstad Ana |
| 8 | 86th | RP John Rocker Atl |
| 9 | 107th | RP Jeff Shaw LA |
| 10 | 110th | SP Mike Hampton Col |
| 11 | 131st | SP Dustin Hermanson StL |
| 12 | 134th | SP Eric Milton Min |
| 13 | 155th | C Darrin Fletcher Tor |
| 14 | 158th | 2B Eric Young ChN |
| 15 | 179th | SP Dave Burba Cle |
| 16 | 182nd | SP Matt Clement Fla |
| 17 | 203rd | OF Jeffrey Hammonds Mil |
| 18 | 206th | 3B Alfonso Soriano NYA |
| 19 | 227th | SS Jimmy Rollins Phi |
| 20 | 230th | SP Omar Daal Phi |
| 21 | 251st | C Mitch Meluskey Det |
| 22 | 254th | 2B Brent Abernathy TB |
| 23 | 275th | 1B David Ortiz Min |
| 24 | 278th | SP Jeff Suppan KC |
| 25 | 299th | SP John Burkett Atl |
| 26 | 302nd | SP Jose Mercedes Bal |
| 27 | 323rd | OF Travis Lee Phi |
| 28 | 326th | SP Steve Parris Tor |
| 29 | 347th | 3B Olmedo Saenz Oak |