| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 3B Chipper Jones Atl |
| 2 | 15th | 1B Jason Giambi Oak |
| 3 | 34th | OF Juan Gonzalez Cle |
| 4 | 39th | SP Bartolo Colon Cle |
| 5 | 58th | C Jorge Posada NYA |
| 6 | 63rd | OF Johnny Damon Oak |
| 7 | 82nd | 1B Jim Thome Cle |
| 8 | 87th | OF Geoff Jenkins Mil |
| 9 | 106th | SS Barry Larkin Cin |
| 10 | 111th | RP Danny Graves Cin |
| 11 | 130th | RP John Smoltz Atl |
| 12 | 135th | SP Jeff D'Amico Mil |
| 13 | 154th | OF Bob Higginson Det |
| 14 | 159th | SP Brad Radke Min |
| 15 | 178th | SP Shawn Estes SF |
| 16 | 183rd | SP Andy Ashby LA |
| 17 | 202nd | OF Ellis Burks Cle |
| 18 | 207th | 2B Quilvio Veras Atl |
| 19 | 226th | RP Jose Jimenez Col |
| 20 | 231st | 1B Derrek Lee Fla |
| 21 | 250th | SP Ramon Ortiz Ana |
| 22 | 255th | SP Ben Sheets Mil |
| 23 | 274th | 2B Fernando Vina StL |
| 24 | 279th | 3B Aramis Ramirez Pit |
| 25 | 298th | C Sandy Alomar Jr. ChA |
| 26 | 303rd | RP Jose Mesa Phi |
| 27 | 322nd | SP C.C. Sabathia Cle |
| 28 | 327th | SS Mark Loretta Mil |
| 29 | 346th | SP James Baldwin ChA |