| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 1B Todd Helton Col |
| 2 | 21st | OF Andruw Jones Atl |
| 3 | 28th | RP Mariano Rivera NYA |
| 4 | 45th | OF Gary Sheffield LA |
| 5 | 52nd | SP Al Leiter NYN |
| 6 | 69th | 3B Jeff Cirillo Col |
| 7 | 76th | SP David Wells ChA |
| 8 | 93rd | 3B Fernando Tatis Mon |
| 9 | 100th | SS Omar Vizquel Cle |
| 10 | 117th | OF Jeromy Burnitz Mil |
| 11 | 124th | RP Jeff Shaw LA |
| 12 | 141st | OF Russ Branyan Cle |
| 13 | 148th | 3B Adrian Beltre LA |
| 14 | 165th | 2B Chuck Knoblauch NYA |
| 15 | 172nd | SP Glendon Rusch NYN |
| 16 | 189th | SP Brian Anderson Ari |
| 17 | 196th | C Brad Ausmus Hou |
| 18 | 213th | 2B Damion Easley Det |
| 19 | 220th | SP Albie Lopez TB |
| 20 | 237th | 1B Kevin Young Pit |
| 21 | 244th | SS Alex Gonzalez Tor |
| 22 | 261st | OF Matt Stairs ChN |
| 23 | 268th | C Damian Miller Ari |
| 24 | 285th | 3B Michael Barrett Mon |
| 25 | 292nd | RP Byung-Hyun Kim Ari |
| 26 | 309th | SP Doug Davis Tex |
| 27 | 316th | SP Chuck Smith Fla |
| 28 | 333rd | SP Jose Rosado KC |
| 29 | 340th | RP Steve Karsay Cle |