| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SS Derek Jeter NYA |
| 2 | 13th | 2B Jeff Kent SF |
| 3 | 36th | 1B Sean Casey Cin |
| 4 | 37th | 1B Mike Sweeney KC |
| 5 | 60th | RP Kazuhiro Sasaki Sea |
| 6 | 61st | OF Richard Hidalgo Hou |
| 7 | 84th | RP Dave Veres StL |
| 8 | 85th | OF Raul Mondesi Tor |
| 9 | 108th | SP Eric Milton Min |
| 10 | 109th | SP Barry Zito Oak |
| 11 | 132nd | SP Rick Reed NYN |
| 12 | 133rd | SP Jeff Weaver Det |
| 13 | 156th | 3B Corey Koskie Min |
| 14 | 157th | SP Aaron Sele Sea |
| 15 | 180th | C Darrin Fletcher Tor |
| 16 | 181st | OF Carlos Beltran KC |
| 17 | 204th | SS Cristian Guzman Min |
| 18 | 205th | C Scott Hatteberg Bos |
| 19 | 228th | 3B Herbert Perry ChA |
| 20 | 229th | 2B Carlos Febles KC |
| 21 | 252nd | OF Mike Cameron Sea |
| 22 | 253rd | SP Frank Castillo Bos |
| 23 | 276th | SP Tomo Ohka Bos |
| 24 | 277th | OF Roger Cedeno Det |
| 25 | 300th | OF Trot Nixon Bos |
| 26 | 301st | SP Makoto Suzuki KC |
| 27 | 324th | RP Matt Anderson Det |
| 28 | 325th | 1B Mark Grace Ari |
| 29 | 348th | SP Blake Stein KC |