| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Barry Bonds SF |
| 3 | 25th | SP Kevin Brown LA |
| 4 | 48th | OF Bernie Williams NYA |
| 5 | 49th | SP Tom Glavine Atl |
| 6 | 72nd | OF Shawn Green LA |
| 7 | 73rd | C Mike Lieberthal Phi |
| 8 | 96th | SP Mike Hampton Col |
| 9 | 97th | RP Jason Isringhausen Oak |
| 10 | 120th | DH Edgar Martinez Sea |
| 11 | 121st | 3B Dean Palmer Det |
| 12 | 144th | 1B Tony Clark Det |
| 13 | 145th | 2B Jose Ortiz Oak |
| 14 | 168th | OF David Justice NYA |
| 15 | 169th | SS Tony Womack Ari |
| 16 | 192nd | SP Kevin Appier NYN |
| 17 | 193rd | 1B John Olerud Sea |
| 18 | 216th | 2B Jay Bell Ari |
| 19 | 217th | RP Tom Gordon ChN |
| 20 | 240th | C Brook Fordyce Bal |
| 21 | 241st | OF Jeffrey Hammonds Mil |
| 22 | 264th | SP Jose Lima Hou |
| 23 | 265th | 3B Jose Hernandez Mil |
| 24 | 288th | SP Mike Sirotka Tor |
| 25 | 289th | OF Terrence Long Oak |
| 26 | 312th | 3B Bill Mueller ChN |
| 27 | 313th | 1B Tino Martinez NYA |
| 28 | 336th | SP Julian Tavarez ChN |
| 29 | 337th | SP Mark Redman Min |