| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SP Pedro Martinez Bos |
| 2 | 22nd | 1B Mark McGwire StL |
| 3 | 27th | C Jason Kendall Pit |
| 4 | 46th | RP Derek Lowe Bos |
| 5 | 51st | 3B Tony Batista Tor |
| 6 | 70th | OF Jermaine Dye KC |
| 7 | 75th | SS Edgar Renteria StL |
| 8 | 94th | OF Carl Everett Bos |
| 9 | 99th | 2B Eric Young ChN |
| 10 | 118th | 1B Pat Burrell Phi |
| 11 | 123rd | RP Anthony Alford Fla |
| 12 | 142nd | OF Ben Grieve TB |
| 13 | 147th | SP Jon Lieber ChN |
| 14 | 166th | OF Carlos Lee ChA |
| 15 | 171st | C Jason Varitek Bos |
| 16 | 190th | SP Esteban Loaiza Tor |
| 17 | 195th | DH Brad Fullmer Tor |
| 18 | 214th | SP Omar Daal Phi |
| 19 | 219th | SP Pete Harnisch Cin |
| 20 | 238th | 3B Ken Caminiti Tex |
| 21 | 243rd | SS Carlos Guillen Sea |
| 22 | 262nd | SP Brian Moehler Det |
| 23 | 267th | SP Denny Neagle Col |
| 24 | 286th | 2B Mark Grudzielanek LA |
| 25 | 291st | SP Andy Benes StL |
| 26 | 310th | SP Jamey Wright Mil |
| 27 | 315th | OF Milton Bradley Mon |
| 28 | 334th | SP Pat Hentgen Bal |
| 29 | 339th | 3B Mike Lamb Tex |