| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jeff Bagwell Hou |
| 2 | 18th | OF Ken Griffey Jr Cin |
| 3 | 31st | 2B Roberto Alomar NYN |
| 4 | 42nd | OF Magglio Ordonez ChA |
| 5 | 55th | RP Billy Wagner Hou |
| 6 | 66th | SP Kerry Wood ChN |
| 7 | 79th | OF J.D. Drew StL |
| 8 | 90th | RP Todd Jones Det |
| 9 | 103rd | 3B Eric Chavez Oak |
| 10 | 114th | C Javy Lopez Atl |
| 11 | 127th | SP Freddy Garcia Sea |
| 12 | 138th | SP Darren Dreifort LA |
| 13 | 151st | SP Russ Ortiz SF |
| 14 | 162nd | OF Ichiro Suzuki Sea |
| 15 | 175th | 3B Alfonso Soriano NYA |
| 16 | 186th | SS Deivi Cruz Det |
| 17 | 199th | SP Mark Mulder Oak |
| 18 | 210th | 2B Pokey Reese Cin |
| 19 | 223rd | SP LaTroy Hawkins Min |
| 20 | 234th | 1B Steve Cox TB |
| 21 | 247th | 1B Rico Brogna Atl |
| 22 | 258th | OF Doug Glanville Phi |
| 23 | 271st | SS Orlando Cabrera Mon |
| 24 | 282nd | SP Jamie Moyer Sea |
| 25 | 295th | SP Osvaldo Fernandez Cin |
| 26 | 306th | C Einar Diaz Cle |
| 27 | 319th | SP Paul Wilson TB |
| 28 | 330th | OF Juan Pierre Col |
| 29 | 343rd | SP Jimmy Anderson Pit |