| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Shawn Green LA |
| 3 | 25th | OF Lance Berkman Hou |
| 4 | 48th | 1B Phil Nevin SD |
| 5 | 49th | OF J.D. Drew StL |
| 6 | 72nd | 2B Jose Vidro Mon |
| 7 | 73rd | OF Cliff Floyd Fla |
| 8 | 96th | 3B Adrian Beltre LA |
| 9 | 97th | OF Moises Alou ChN |
| 10 | 120th | C Toby Hall TB |
| 11 | 121st | OF Trot Nixon Bos |
| 12 | 144th | 3B Hank Blalock Tex |
| 13 | 145th | SS Juan Uribe Col |
| 14 | 168th | SP Jarrod Washburn Ana |
| 15 | 169th | SP Mark Prior ChN |
| 16 | 192nd | 3B Sean Burroughs SD |
| 17 | 193rd | C Ramon Hernandez Oak |
| 18 | 216th | SP Brandon Duckworth Phi |
| 19 | 217th | SP Livan Hernandez SF |
| 20 | 240th | SP Jason Johnson Bal |
| 21 | 241st | SP Carl Pavano Mon |
| 22 | 264th | SP Jamey Wright Mil |
| 23 | 265th | SP Scott Schoeneweis Ana |
| 24 | 288th | 1B Kevin Young Pit |
| 25 | 289th | SP Brian Lawrence SD |
| 26 | 312th | RP Jose Jimenez Col |
| 27 | 313th | RP Braden Looper Fla |
| 28 | 336th | SP Bobby J. Jones SD |
| 29 | 337th | SP Eric Gagne LA |