| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Sammy Sosa ChN |
| 2 | 22nd | OF Bobby Abreu Phi |
| 3 | 27th | SS Miguel Tejada Oak |
| 4 | 46th | C Jorge Posada NYA |
| 5 | 51st | RP Keith Foulke ChA |
| 6 | 70th | OF Ryan Klesko SD |
| 7 | 75th | 2B Ray Durham ChA |
| 8 | 94th | 1B Richie Sexson Mil |
| 9 | 99th | DH Edgar Martinez Sea |
| 10 | 118th | SP Brad Radke Min |
| 11 | 123rd | 3B Jeff Cirillo Sea |
| 12 | 142nd | OF Jermaine Dye Oak |
| 13 | 147th | SP Woody Williams StL |
| 14 | 166th | SP A.J. Burnett Fla |
| 15 | 171st | SP Kevin Millwood Atl |
| 16 | 190th | SP Pedro Astacio NYN |
| 17 | 195th | RP Mike Williams Pit |
| 18 | 214th | RP Jeff Zimmerman Tex |
| 19 | 219th | SP Chris Carpenter Tor |
| 20 | 238th | OF Bob Higginson Det |
| 21 | 243rd | RP Scott Strickland Mon |
| 22 | 262nd | SP Andy Ashby LA |
| 23 | 267th | SP Brian Anderson Ari |
| 24 | 286th | 1B Lee Stevens Mon |
| 25 | 291st | SP Jeff D'Amico NYN |
| 26 | 310th | 2B D'Angelo Jimenez SD |
| 27 | 315th | SS Julio Lugo Hou |
| 28 | 334th | C Ben Molina Ana |
| 29 | 339th | 3B Shane Halter Det |