| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Mike Piazza NYN |
| 2 | 21st | OF Chipper Jones Atl |
| 3 | 28th | SP Mike Mussina NYA |
| 4 | 45th | SP Freddy Garcia Sea |
| 5 | 52nd | RP Armando Benitez NYN |
| 6 | 69th | OF Andruw Jones Atl |
| 7 | 76th | RP Jose Mesa Phi |
| 8 | 93rd | SS Jimmy Rollins Phi |
| 9 | 100th | SP Wade Miller Hou |
| 10 | 117th | OF Johnny Damon Bos |
| 11 | 124th | DH Nick Johnson NYA |
| 12 | 141st | OF Daryle Ward Hou |
| 13 | 148th | 1B John Olerud Sea |
| 14 | 165th | SP Bud Smith StL |
| 15 | 172nd | SP Aaron Sele Ana |
| 16 | 189th | 1B Carlos Pena Oak |
| 17 | 196th | 3B Eric Hinske Tor |
| 18 | 213th | 2B Eric Young Mil |
| 19 | 220th | C Todd Hundley ChN |
| 20 | 237th | OF Gabe Kapler Tex |
| 21 | 244th | SP Carlos Hernandez Hou |
| 22 | 261st | SP Sidney Ponson Bal |
| 23 | 268th | OF Frank Catalanotto Tex |
| 24 | 285th | SP Matt Clement ChN |
| 25 | 292nd | 3B Travis Fryman Cle |
| 26 | 309th | RP Eddie Guardado Min |
| 27 | 316th | SS Benji Gil Ana |
| 28 | 333rd | 2B Brent Abernathy TB |
| 29 | 340th | SP Mark Redman Det |