| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Barry Bonds SF |
| 2 | 19th | 3B Albert Pujols StL |
| 3 | 30th | OF Ken Griffey Jr Cin |
| 4 | 43rd | SS Rich Aurilia SF |
| 5 | 54th | RP Robb Nen SF |
| 6 | 67th | SP Mark Buehrle ChA |
| 7 | 78th | SP Josh Beckett Fla |
| 8 | 91st | SP Jon Lieber ChN |
| 9 | 102nd | 2B Craig Biggio Hou |
| 10 | 115th | 1B Sean Casey Cin |
| 11 | 126th | SP Jamie Moyer Sea |
| 12 | 139th | OF Jeromy Burnitz NYN |
| 13 | 150th | SP Cory Lidle Oak |
| 14 | 163rd | C Jason Varitek Bos |
| 15 | 174th | OF Todd Hollandsworth Col |
| 16 | 187th | SP Jason Schmidt SF |
| 17 | 198th | SP Todd Ritchie ChA |
| 18 | 211th | OF Kenny Lofton ChA |
| 19 | 222nd | SP Paul Abbott Sea |
| 20 | 235th | SP Dustin Hermanson Bos |
| 21 | 246th | SP Kyle Farnsworth ChN |
| 22 | 259th | RP Matt Herges Mon |
| 23 | 270th | SS Royce Clayton ChA |
| 24 | 283rd | 1B Travis Lee Phi |
| 25 | 294th | 3B David Bell SF |
| 26 | 307th | SP Brett Myers Phi |
| 27 | 318th | 2B Ricky Gutierrez Cle |
| 28 | 331st | C Sandy Alomar Jr. ChA |
| 29 | 342nd | OF Austin Kearns Cin |