| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Vladimir Guerrero Mon |
| 2 | 17th | SS Derek Jeter NYA |
| 3 | 32nd | SP Greg Maddux Atl |
| 4 | 41st | OF Gary Sheffield Atl |
| 5 | 56th | RP Trevor Hoffman SD |
| 6 | 65th | 2B Jeff Kent SF |
| 7 | 80th | 1B Frank Thomas ChA |
| 8 | 89th | SP Kerry Wood ChN |
| 9 | 104th | SP Russ Ortiz SF |
| 10 | 113th | OF Richard Hidalgo Hou |
| 11 | 128th | OF Darin Erstad Ana |
| 12 | 137th | RP Matt Anderson Det |
| 13 | 152nd | C Mike Lieberthal Phi |
| 14 | 161st | SP Ryan Dempster Fla |
| 15 | 176th | 1B Tony Clark Bos |
| 16 | 185th | SP Kelvim Escobar Tor |
| 17 | 200th | 3B Aaron Boone Cin |
| 18 | 209th | SP Derek Lowe Bos |
| 19 | 224th | SP Roy Halladay Tor |
| 20 | 233rd | 2B Marlon Anderson Phi |
| 21 | 248th | 3B Tony Batista Bal |
| 22 | 257th | OF Ben Grieve TB |
| 23 | 272nd | SP Kip Wells Pit |
| 24 | 281st | SS Tony Womack Ari |
| 25 | 296th | OF Torii Hunter Min |
| 26 | 305th | RP Jeff Shaw LA |
| 27 | 320th | C Brad Ausmus Hou |
| 28 | 329th | SP Elmer Dessens Cin |
| 29 | 344th | OF Doug Glanville Phi |