| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Pedro Martinez Bos |
| 2 | 16th | OF Larry Walker Col |
| 3 | 33rd | 1B Mike Sweeney KC |
| 4 | 40th | OF Magglio Ordonez ChA |
| 5 | 57th | SP Kevin Brown LA |
| 6 | 64th | 3B Corey Koskie Min |
| 7 | 81st | RP Jason Isringhausen StL |
| 8 | 88th | 2B Alfonso Soriano NYA |
| 9 | 105th | SS Orlando Cabrera Mon |
| 10 | 112th | SP Eric Milton Min |
| 11 | 129th | SP Jeff Weaver Det |
| 12 | 136th | OF Shannon Stewart Tor |
| 13 | 153rd | C Charles Johnson Fla |
| 14 | 160th | SP Robert Person Phi |
| 15 | 177th | SP Ramon Ortiz Ana |
| 16 | 184th | RP Esteban Yan TB |
| 17 | 201st | SP Kevin Appier Ana |
| 18 | 208th | OF Carlos Lee ChA |
| 19 | 225th | SP Mike Sirotka Tor |
| 20 | 232nd | 2B Fernando Vina StL |
| 21 | 249th | 3B Joe Randa KC |
| 22 | 256th | 1B Doug Mientkiewicz Min |
| 23 | 273rd | SP Paul Wilson TB |
| 24 | 280th | SP Glendon Rusch Mil |
| 25 | 297th | OF Mark Kotsay SD |
| 26 | 304th | C Darrin Fletcher Tor |
| 27 | 321st | SP Omar Daal LA |
| 28 | 328th | SS Rey Ordonez NYN |
| 29 | 345th | OF Terrence Long Oak |