| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Jason Giambi NYA |
| 2 | 15th | OF Manny Ramirez Bos |
| 3 | 34th | 1B Rafael Palmeiro Tex |
| 4 | 39th | SP Tim Hudson Oak |
| 5 | 58th | 3B Aramis Ramirez Pit |
| 6 | 63rd | RP Billy Koch Oak |
| 7 | 82nd | OF Jim Edmonds StL |
| 8 | 87th | SP Bartolo Colon Cle |
| 9 | 106th | SP Tom Glavine Atl |
| 10 | 111th | RP Byung-Hyun Kim Ari |
| 11 | 130th | OF Jose Cruz Jr Tor |
| 12 | 135th | SP C.C. Sabathia Cle |
| 13 | 154th | SP Danys Baez Cle |
| 14 | 159th | 3B Morgan Ensberg Hou |
| 15 | 178th | SP Jason Marquis Atl |
| 16 | 183rd | RP John Rocker Tex |
| 17 | 202nd | C Wiklenman Gonzalez SD |
| 18 | 207th | OF Russ Branyan Cle |
| 19 | 226th | RP Chad Fox Mil |
| 20 | 231st | 2B Mike Young Tex |
| 21 | 250th | SS Alex Gonzalez ChN |
| 22 | 255th | 1B Derrek Lee Fla |
| 23 | 274th | OF Rondell White NYA |
| 24 | 279th | OF Kevin Millar Fla |
| 25 | 298th | SP Bruce Chen NYN |
| 26 | 303rd | C A.J. Pierzynski Min |
| 27 | 322nd | OF Robert Fick Det |
| 28 | 327th | 2B Ron Belliard Mil |
| 29 | 346th | SS Ramon Vazquez SD |