| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 2B Roberto Alomar NYN |
| 2 | 14th | SS Nomar Garciaparra Bos |
| 3 | 35th | OF Juan Gonzalez Tex |
| 4 | 38th | SP Matt Morris StL |
| 5 | 59th | C Paul Lo Duca LA |
| 6 | 62nd | RP Troy Percival Ana |
| 7 | 83rd | RP John Smoltz Atl |
| 8 | 86th | 3B Edgardo Alfonzo NYN |
| 9 | 107th | SP Darryl Kile StL |
| 10 | 110th | 1B Paul Konerko ChA |
| 11 | 131st | SP Joe Mays Min |
| 12 | 134th | OF Geoff Jenkins Mil |
| 13 | 155th | SP Shawn Estes NYN |
| 14 | 158th | OF Preston Wilson Fla |
| 15 | 179th | OF Garret Anderson Ana |
| 16 | 182nd | DH Ellis Burks Cle |
| 17 | 203rd | 1B Tino Martinez StL |
| 18 | 206th | SP Steve Sparks Det |
| 19 | 227th | 3B Todd Zeile Col |
| 20 | 230th | SP Shane Reynolds Hou |
| 21 | 251st | OF Brian Jordan LA |
| 22 | 254th | C Ben Davis Sea |
| 23 | 275th | SP Kirk Rueter SF |
| 24 | 278th | SP Josh Towers Bal |
| 25 | 299th | SP Kris Benson Pit |
| 26 | 302nd | 2B Jose Offerman Bos |
| 27 | 323rd | SS Felipe Lopez Tor |
| 28 | 326th | SP Todd Stottlemyre Ari |
| 29 | 347th | SP Terry Adams Phi |