| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 2B Roberto Alomar NYN |
| 3 | 25th | 3B Eric Chavez Oak |
| 4 | 48th | OF Magglio Ordonez ChA |
| 5 | 49th | SP Kevin Brown LA |
| 6 | 72nd | C Jason Kendall Pit |
| 7 | 73rd | 2B Jeff Kent SF |
| 8 | 96th | SP Jon Lieber ChN |
| 9 | 97th | RP Ugueth Urbina Bos |
| 10 | 120th | 1B Sean Casey Cin |
| 11 | 121st | SP Jeff Weaver Det |
| 12 | 144th | OF Daryle Ward Hou |
| 13 | 145th | OF Carl Everett Tex |
| 14 | 168th | SP Tony Armas Jr. Mon |
| 15 | 169th | SP Pedro Astacio NYN |
| 16 | 192nd | RP Mike Williams Pit |
| 17 | 193rd | C Ben Petrick Col |
| 18 | 216th | DH Nick Johnson NYA |
| 19 | 217th | 1B Travis Lee Phi |
| 20 | 240th | OF Ben Grieve TB |
| 21 | 241st | SP Garrett Stephenson StL |
| 22 | 264th | SP Albie Lopez Atl |
| 23 | 265th | RP Willis Roberts Bal |
| 24 | 288th | SP Miguel Batista Ari |
| 25 | 289th | SS Carlos Guillen Sea |
| 26 | 312th | OF Marty Cordova Bal |
| 27 | 313th | 3B Joe Randa KC |
| 28 | 336th | OF Shane Spencer NYA |
| 29 | 337th | RP Mike DeJean Mil |