| Round | Overall | Player |
|---|---|---|
| 1 | 5th | C Mike Piazza NYN |
| 2 | 20th | RP Mariano Rivera NYA |
| 3 | 29th | SP Curt Schilling Ari |
| 4 | 44th | OF Andruw Jones Atl |
| 5 | 53rd | 1B Frank Thomas ChA |
| 6 | 68th | OF Bernie Williams NYA |
| 7 | 77th | 2B Craig Biggio Hou |
| 8 | 92nd | SP Chan Ho Park Tex |
| 9 | 101st | 3B Corey Koskie Min |
| 10 | 116th | OF Jeromy Burnitz NYN |
| 11 | 125th | OF Raul Mondesi Tor |
| 12 | 140th | OF Brian Jordan LA |
| 13 | 149th | RP Jeff Zimmerman Tex |
| 14 | 164th | SS Alex Gonzalez ChN |
| 15 | 173rd | RP Esteban Yan TB |
| 16 | 188th | 1B Dmitri Young Det |
| 17 | 197th | SP Chris Carpenter Tor |
| 18 | 212th | SP Sidney Ponson Bal |
| 19 | 221st | 3B Tony Batista Bal |
| 20 | 236th | RP Jose Jimenez Col |
| 21 | 245th | SS Neifi Perez KC |
| 22 | 260th | SP Denny Neagle Col |
| 23 | 269th | 2B Jerry Hairston Jr. Bal |
| 24 | 284th | OF Mark Kotsay SD |
| 25 | 293rd | SP Andy Ashby LA |
| 26 | 308th | SP Mark Redman Det |
| 27 | 317th | SP Darren Oliver Bos |
| 28 | 332nd | RP Tom Gordon ChN |
| 29 | 341st | 3B Matt Williams Ari |