| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Randy Johnson Ari |
| 2 | 19th | 3B Troy Glaus Ana |
| 3 | 30th | OF Ken Griffey Jr Cin |
| 4 | 43rd | SP Barry Zito Oak |
| 5 | 54th | SP Freddy Garcia Sea |
| 6 | 67th | SP Kerry Wood ChN |
| 7 | 78th | SP Roger Clemens NYA |
| 8 | 91st | SP Russ Ortiz SF |
| 9 | 102nd | SP Bartolo Colon Cle |
| 10 | 115th | SS Rafael Furcal Atl |
| 11 | 126th | OF Preston Wilson Fla |
| 12 | 139th | SP Kelvim Escobar Tor |
| 13 | 150th | OF Garret Anderson Ana |
| 14 | 163rd | SP Bud Smith StL |
| 15 | 174th | 2B Luis Castillo Fla |
| 16 | 187th | SP Roy Halladay Tor |
| 17 | 198th | 1B Carlos Pena Oak |
| 18 | 211th | OF Juan Pierre Col |
| 19 | 222nd | 3B Aaron Boone Cin |
| 20 | 235th | SP Kyle Farnsworth ChN |
| 21 | 246th | OF Kevin Millar Fla |
| 22 | 259th | SP Orlando Hernandez NYA |
| 23 | 270th | SP Jason Johnson Bal |
| 24 | 283rd | C Mitch Meluskey Det |
| 25 | 294th | SP Carl Pavano Mon |
| 26 | 307th | 2B D'Angelo Jimenez SD |
| 27 | 318th | C Ben Davis Sea |
| 28 | 331st | 3B Eric Hinske Tor |
| 29 | 342nd | SS Julio Lugo Hou |