| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Vladimir Guerrero Mon |
| 2 | 16th | C Ivan Rodriguez Tex |
| 3 | 33rd | SP Roy Oswalt Hou |
| 4 | 40th | RP Armando Benitez NYN |
| 5 | 57th | 3B Edgardo Alfonzo NYN |
| 6 | 64th | 1B Mike Sweeney KC |
| 7 | 81st | SS Juan Uribe Col |
| 8 | 88th | RP John Smoltz Atl |
| 9 | 105th | OF Jim Edmonds StL |
| 10 | 112th | SP Eric Milton Min |
| 11 | 129th | OF Darin Erstad Ana |
| 12 | 136th | C Toby Hall TB |
| 13 | 153rd | SP A.J. Burnett Fla |
| 14 | 160th | SP Kazuhisa Ishii LA |
| 15 | 177th | 2B Luis Rivas Min |
| 16 | 184th | 1B John Olerud Sea |
| 17 | 201st | SP Kevin Appier Ana |
| 18 | 208th | SP Juan Cruz ChN |
| 19 | 225th | OF Vernon Wells Tor |
| 20 | 232nd | SP Rick Reed Min |
| 21 | 249th | 3B Travis Fryman Cle |
| 22 | 256th | OF Jeremy Giambi Oak |
| 23 | 273rd | DH Brad Fullmer Ana |
| 24 | 280th | OF Rondell White NYA |
| 25 | 297th | SP James Baldwin Sea |
| 26 | 304th | 1B Erubiel Durazo Ari |
| 27 | 321st | 2B Ricky Gutierrez Cle |
| 28 | 328th | SS Jack Wilson Pit |
| 29 | 345th | 1B Jay Gibbons Bal |