| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Nomar Garciaparra Bos |
| 2 | 14th | 1B Carlos Delgado Tor |
| 3 | 35th | SP Tim Hudson Oak |
| 4 | 38th | OF Brian S. Giles Pit |
| 5 | 59th | RP Robb Nen SF |
| 6 | 62nd | OF J.D. Drew StL |
| 7 | 83rd | C Paul Lo Duca LA |
| 8 | 86th | 2B Jose Vidro Mon |
| 9 | 107th | SP Al Leiter NYN |
| 10 | 110th | SP Tom Glavine Atl |
| 11 | 131st | SP Joe Mays Min |
| 12 | 134th | SP Ryan Dempster Fla |
| 13 | 155th | RP Danny Graves Cin |
| 14 | 158th | OF Jose Cruz Jr Tor |
| 15 | 179th | 1B Tino Martinez StL |
| 16 | 182nd | 3B Sean Burroughs SD |
| 17 | 203rd | RP Roberto Hernandez KC |
| 18 | 206th | OF Tim Salmon Ana |
| 19 | 227th | SP Ramon Ortiz Ana |
| 20 | 230th | 3B Todd Zeile Col |
| 21 | 251st | C Todd Hundley ChN |
| 22 | 254th | OF Torii Hunter Min |
| 23 | 275th | SP Danys Baez Cle |
| 24 | 278th | SS Tony Womack Ari |
| 25 | 299th | SP Jason Bere ChN |
| 26 | 302nd | OF Greg Vaughn TB |
| 27 | 323rd | 1B David Segui Bal |
| 28 | 326th | 3B Fernando Tatis Mon |
| 29 | 347th | 2B Craig Counsell Ari |