| Round | Overall | Player |
|---|---|---|
| 1 | 3rd |
OF
Sammy Sosa
|
| 2 | 22nd |
OF
Chipper Jones
|
| 3 | 27th |
1B
Rafael Palmeiro
|
| 4 | 46th |
OF
Juan Gonzalez
|
| 5 | 51st |
OF
Magglio Ordonez
|
| 6 | 70th |
3B
Edgardo Alfonzo
|
| 7 | 75th | C Paul Lo Duca |
| 8 | 94th |
SS
Cristian Guzman
|
| 9 | 99th |
OF
Pat Burrell
|
| 10 | 118th |
2B
Jose Ortiz
|
| 11 | 123rd | SP Josh Beckett |
| 12 | 142nd |
SP
Andy Pettitte
|
| 13 | 147th |
SP
Mark Prior
|
| 14 | 166th |
1B
Tony Clark
|
| 15 | 171st |
3B
Jose Valentin
|
| 16 | 190th | SP Jarrod Washburn |
| 17 | 195th |
SP
Brandon Duckworth
|
| 18 | 214th |
SP
John Burkett
|
| 19 | 219th |
SP
Shawn Estes
|
| 20 | 238th |
DH
Ellis Burks
|
| 21 | 243rd |
SP
Jason Johnson
|
| 22 | 262nd | SP Scott Schoeneweis |
| 23 | 267th |
SP
Brian Lawrence
|
| 24 | 286th |
3B
Fernando Tatis
|
| 25 | 291st |
2B
Frank Menechino
|
| 26 | 310th |
1B
Kevin Young
|
| 27 | 315th |
SP
Carlos Hernandez
|
| 28 | 334th |
OF
Jeff Conine
|
| 29 | 339th |
C
Damian Miller
|